Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs9390354 chr6:146108396 A/C 2.64E-5 184 9.77 13.5 13.57 KM Plot
ESCA rs9390357 chr6:146129347 A/G 7.73E-5 184 13.57 13.5 10.1 KM Plot
ESCA rs9399565 chr6:146081906 G/T 7.16E-5 183 10.1 13.6 13.57 KM Plot
ESCA rs9478009 chr6:170192191 G/A 3.97E-8 184 12.9 20.33 1.57 KM Plot
ESCA rs9485017 chr6:146023326 C/T 6.55E-5 184 13.4 12.63 11.8 KM Plot
ESCA rs9485021 chr6:146068797 A/G 9.6E-5 184 10.1 13.5 13.57 KM Plot
ESCA rs9497266 chr6:145680575 C/T 5.47E-5 184 7.7 13.6 13.42 KM Plot
ESCA rs9497395 chr6:146013592 A/G 9.15E-5 184 10.1 13.12 13.57 KM Plot
ESCA rs9552038 chr13:20471003 A/G 0 178 13.37 12.67 1.5 KM Plot
ESCA rs9785100 chr8:2454978 A/C 1.73E-9 179 13.35 14.15 2.93 KM Plot
ESCA rs9923569 chr16:1505892 G/A 3.11E-7 180 13.18 14.12 4 KM Plot
ESCA rs9935332 chr16:10848843 A/G 9.84E-5 181 13.37 9.97 5.37 KM Plot
ESCA rs9940537 chr16:8706527 G/A 4.35E-5 182 3.2 13.03 13.35 KM Plot
ESCA rs9940609 chr16:8706623 G/A 4.35E-5 182 3.2 13.03 13.35 KM Plot
HNSC rs10013089 chr4:140256405 T/A 5.03E-5 515 20.83 26.8 18.2 KM Plot